Metadata
HuBMAP metadata documentation and submission specifications. Please refer to the HuBMAP Data Upload Guidelines for the latest assay metadata options and specifications. The Ingest Validation Tools repository is used to maintain the Data Upload Guidelines.
Link to the current version of the Data Submission Guide. See section 10 of the Guide for details on transferring metadata to the HIVE.
Donor
Sample
- This Specification has been replaced by the individual Block, Section, and Suspension specifications below. For more details please review this document.
Sample Block
- Specification
Sample Section
- Specification
Sample Suspension
- Specification
Assay
- 10x Multiome
- AF (Autofluorescence)
- ATACseq
- Body CT
- Cell DIVE
- CODEX (Not PhenoCycler, see below for PhenoCycler)
- Confocal
- CosMx
- CosMx Proteomics
- CosMx Transcriptomics
- CyTOF
- CyCIF
- DBiT-seq
- DESI
- Enhanced SRS
- FACS
- GeoMx (NGS)
- HiFi
- Histology
- IMC (Imaging Mass Cytometry)
- 2D IMC
- 3D IMC
- LC-MS
- Light Sheet
- MALDI-IMS (neg and pos modes - Matrix Assisted Laser Desorption Ionization Imaging Mass Spectrometry)
- MERFISH
- Molecular Cartography
- MPLEx
- MIBI
- Micro CT
- MRI
- MUSIC
- NanoDESI
- OCT
- Olink
- PhenoCycler
- Pixel-seqV2
- RNAseq
- Specification
- With Probes
- SeqFISH
- Second Harmonic Generation
- Seq-Scope
- SIMS
- Singular Genomics G4X
- Slide-seq
- SnareSeq2
- Stereo-seq
- Thick Section Multiphoton MxIF
- Ultrasound
- Visium
- With Probes
- No Probes
- HD
- Xenium
EPICs
- Segmentation Mask
- Object x Analyte
Other
- Antibodies
- Contributors
- Publication