HuBMAP Data Submission
To submit data to HuBMAP please review the HuBMAP Data Submission Guide
HuBMAP Software Documentation
HuBMAP offers several software and tool components for programatic access to HuBMAP data and metadata. This site contains information about this software and tools, more information is available at the HuBMAP Consortium Site or the HuBMAP Data Portal
For an overview of HuBMAP data visit the Data Overview page.
APIs
There are several APIs which can be used to search and retrieve information about HuBMAP data. All are linked below in the architecture diagram and on the API Index.
For a quick guide to query and data download access via the APIs please see the Data Query and Download example.
SDK
The HuBMAP SDK is a Python library to interface with the Entity API.
HuBMAP Command Line Transfer Tool
The HuBMAP CLT is a stand alone command line tool that enables bulk download of HuBMAP data by specifying the data to be downloaded in a manifest file.