About
HuBMAP Consortium
The HuBMAP Consortium develops tools to integrate & map diverse biological data across the healthy human body. HuBMAP tools and data are freely & openly available to the global research community. Our aim is to accelerate efforts to understand the relationships between the organization of cells and tissues, biological function and human health.
Consortium Data Access Policies & Procedures
Consortium Data Use Agreement (DUA)
Data Use Agreement (as of 3 February 2020)
Protected Data & Access via dbGaP
Access dbGaP for HuBMAP protected data - please bring along study ID
Citation
Investigators using HuBMAP data in publications or presentations are requested to cite The Human Body at Cellular Resolution: the NIH Human BioMolecular Atlas Program (doi:10.1038/s41586-019-1629-x) and to include an acknowledgement of HuBMAP. Suggested language for such an acknowledgment is: “The results here are in whole or part based upon data generated by the NIH Human BioMolecular Atlas Program (HuBMAP).
Funding
Contact
General - help@hubmapconsortium.org
Public Relations/Media - Robin Scibek (Pittsburgh Supercomputing Center)
NIH Program - Richard Conroy (NIH Common Fund)
Team
| Site | Team | Contributions |
|---|---|---|
|
Carnegie Mellon University PI: Ziv Bar-Joseph |
Matt Ruffalo Maria Keays Vasyl Vaskivsky Sean Donahue Ted Zhang Walt Shands Allyson Ricarte Vladimir Kiselev Robert Murphy Sarah Teichmann Ben Paten |
Pipelines for sc and bulk RNA-Seq Pipelines for sc and bulk ATAC-Seq Pipelines for codex Pipelines for Microscopy and Mass-Spec data SPRM for analysis of imagining data |
|
Harvard Medical School PI: Nils Gehlenborg |
Christine Briggs John Conroy Chuck McCallum Ilan Gold Mark Keller Tiffany Liaw Trevor Manz Margaret Vella |
User Interfaces Data Visualization Curation Metadata |
|
Indiana University PI: Katy Börner |
Daniel Bolin Kristen Browne (NIAID) Andreas D Bueckle Leonard E Cross Bruce W Herr II Edward Lu Matthew S Martindale Mark A Musen (Stanford U) Hrishikesh Paul Adam Phillips Ellen M Quardokus Elizabeth Record Griffin M Weber (HMS) Yingnan Yu |
Common Coordinate Framework (CCF) CCF Ontology ASCT+B Table Visualizations Registration User Interface Exploration User Interface 3D Object Library Visible Human MOOC |
|
University of Pittsburgh PI: Jonathan Silverstein |
Becky Boes Chuck Borromeo Peter Kant Desheng Li Melissa Schwenk Bill Shirey Zhou (Joe) Yuan |
Dev Ops APIs and Gateway Provenance Data Ingest Data release coordination Documentation Security |
|
Pittsburgh Supercomputing Center PI: Philip Blood |
Philip Blood Ivan Cao-Berg Kenneth Chiacchia Stephen Deems Shane Filus Deb Nigra Alex Ropelewski Robin Scibek Derek Simmel Julian Uran Joel Welling |
Hybrid Cloud Infrastructure Workflow Orchestration Data Ingest Data Management Metadata Security Help Desk Communications Coordination Policy |
|
New York Genome Center / EBI PIs: Rahul Satija, John Marioni |
Jaison Jain Andrew Butler Tim Stuart Bill Mauck Aviv Regev Tommasso Biancalini Alsu Missarova Shila Ghazanfar |
Data Harmonization Data Integration Cell Annotation |
Software
HuBMAP GitHub Organization